Category: Lab Notes: Bioinformatics
KEGG (Kyoto Encyclopedia of Genes and Genomes)
The KEGG (Kyoto Encyclopedia of Genes and Genomes) is a comprehensive, knowledge-based resource that integrates genomic, chemical, and functional information…
IntAct
The IntAct molecular interaction database is an open-source, freely accessible resource dedicated to the collection, curation, and dissemination of molecular…
BioGRID (Biological General Repository for Interaction Datasets)
The BioGRID (Biological General Repository for Interaction Datasets) is a widely used, open-access database that provides curated information on protein–protein…
STRING (Search Tool for the Retrieval of Interacting Genes/Proteins)
The STRING database (Search Tool for the Retrieval of Interacting Genes/Proteins) is one of the most widely used resources for…
Protein – Protein Interaction (PPI) Network Analysis
Protein – protein interaction (PPI) network analysis is a powerful systems biology approach used to explore the complex interactions that…
Limma (Linear Models for Microarray Data)
limma (Linear Models for Microarray Data) is a widely used software package from the Bioconductor project in R, designed for…
GEO2R
GEO2R is an interactive, web-based tool provided by the NCBI Gene Expression Omnibus (GEO) that allows users to perform simple…